PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00037250001
Common NameGSBRNA2T00037250001, LOC106420746
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 361aa    MW: 39176 Da    PI: 9.3384
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00037250001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.56.8e-3965126263
               zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                          ++++++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg++rknk+sss
  GSBRNA2T00037250001  65 PQEKINCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKNKRSSS 126
                          6899******************************************************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-2564114IPR003851Zinc finger, Dof-type
PfamPF027018.5E-3367123IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.74269123IPR003851Zinc finger, Dof-type
PROSITE patternPS01361071107IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MMNVKPMEQI MIPNNNTHQS NTPSIARPNT VLTSSGGVSA AGAIVSAGVS NSNNTSVVVE  60
RKSRPQEKIN CPRCNSTNTK FCYYNNYSLT QPRYFCKGCR RYWTEGGSLR NVPVGGSSRK  120
NKRSSSSNIL QTTPSSLGLT TTLPDLNPPI IFSNQIPNKS KGASQDLNML SFPVMQDQHV  180
HMSKFLQMHK MEGNGNMTHQ QPSSSSSLYG SSSSPVSALE LLRTGVNVSS RSGINSFMPS  240
GPMMDSSNNV MYTSSGFPTM VDYKTSNLSF STDHQGLGHN NNNNNNNNNN SSSDAHSDHH  300
QGRVLFSFGD QMKELSSSIT QEVDHDDNQQ QKSHGNNNNS SPNNGYWSGM FSTTGGGSSW  360
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.144940.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00037250001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3528590.0AK352859.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-N20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013717038.10.0PREDICTED: dof zinc finger protein DOF2.5-like isoform X3
SwissprotQ9ZPY00.0DOF25_ARATH; Dof zinc finger protein DOF2.5
TrEMBLA0A078GQ290.0A0A078GQ29_BRANA; BnaC04g50910D protein
STRINGBra039272.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25282673
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46590.11e-144Dof family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]